FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943157

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943157
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529747
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8900.16800472678467268No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6850.12930700881741664No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6550.12364392813928157No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5530.10438945383362247No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5480.10344560705393328No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5460.10306806834205762No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)