FastQCFastQC Report
Sun 21 May 2023
EGAF00007943159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences599251
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17330.2891943442731009No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13560.22628247595748693No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12120.20225247851067418No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8750.1460156094858415No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8260.13783873535463437No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7800.13016248617023585No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7220.12048373719860293No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6950.11597811267732552No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6900.11514373776597786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)