FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943162

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943162
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536165
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44990.8391073643374707No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20560.38346404558298286No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10400.19397013978905747No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10100.18837484729514234No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9460.17643822330812342No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9260.17270802831218002No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9010.16804528456725076No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8640.16114442382475544No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7350.1370846661009204No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7050.1314893736070053No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6250.11656859362323166No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5780.10780263538276463No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5710.10649706713418444No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5610.10463196963621273No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5520.1029533818880382No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5470.10202083313905234No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)