FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943163

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943163
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536823
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14820.2760686483254257No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13160.24514597921475048No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12610.23490051655759908No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11700.21794893288849398No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11070.2062132211175751No Hit
AACCAGGGTGACGTTAATCGGGAACACGTCAAAATAGGTATCAC10480.1952226339035399No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10040.18702626377781875No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9980.18590857694249313No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9870.18385948441106287No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT9480.1765945199814464No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8660.16131946656532972No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT8010.14921119251596895No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7890.14697581884531774No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA7120.13263217112530573No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG6770.126112331252573No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6690.12462208213880553No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6150.11456290062087503No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5940.11065099669723541No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT5900.10990587214035165No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)