FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943164

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943164
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536823
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43740.8147937029523697No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25690.47855624665858204No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20130.37498393325174223No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12890.24011638845578523No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12060.22465505390044765No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10650.1983894132702958No Hit
ATGTCCGATCACCACTTCCCGGCCTCCCTGC10410.19391866592899334No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10020.1866537014993769No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9880.1840457655502838No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9400.1751042708676789No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC9300.17324145947546957No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT8270.15405450213571326No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8120.15126028504739922No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7250.1350538259351779No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA7210.13430870137829415No Hit
TACGACGACTTCCATACCGATGAAGATAAAC6990.13021051631543357No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6790.12648489353101489No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG6000.111768683532561No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5980.11139612125411913No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)