FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943166

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943166
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539273
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42020.7791971784235443No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG14920.2766687744426293No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10320.19136875015066582No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG7070.13110242864003946No Hit
ATGCGTATCAAACGTACCTCCAACCGTTCCA6370.11812199016082764No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6190.11478416312331603No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5970.11070459674413514No Hit
GAACGTTGTTGCGAGGAACTGCAGCGTATGT5510.10217459431493882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)