FastQCFastQC Report
Sun 21 May 2023
EGAF00007943168

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943168
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541376
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44790.8273362690625369No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16040.2962820664381133No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14200.2622945974701501No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9190.16975263033455493No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8820.16291819363991017No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8490.1568226149663081No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8250.152389466840052No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8120.14998817827166333No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7870.1453703156401466No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7420.1370581629034165No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7310.13502630334554913No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG7110.13133201324033575No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7030.12985429719825037No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6810.12579057808251567No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6330.11692428183000354No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6020.11119813216692281No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5860.1082427000827521No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5750.10621084052488475No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5550.10251655041967137No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)