FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943171

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943171
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550451
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18280.33209132148002274No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15730.28576567214883797No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15730.28576567214883797No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13360.24271006865279562No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11040.20056281122207065No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT10510.19093434292970674No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9820.1783991672283273No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9040.1642289686093767No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9000.1635022917571228No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG8740.15877889221747257No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG8450.15351048503863196No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8330.15133045448187032No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7990.14515370123771235No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6970.12662344150523844No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6680.12135503432639781No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6630.12044668826108045No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6590.11972001140882658No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6280.11408826580385902No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5660.10282477459392389No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT5600.10173475931554306No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT5580.10137142088941613No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5580.10137142088941613No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)