FastQCFastQC Report
Sun 21 May 2023
EGAF00007943172

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943172
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550451
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38030.6908880172803755No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18810.34171978977238665No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15920.2892173871970439No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14690.2668720739902371No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11190.2032878494180227No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT11160.20274284177883226No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10940.1987461190914359No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9720.17658247509769262No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9420.17113239870578853No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9300.16895236814902687No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8910.16186726883955158No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA8810.16005057670891687No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8360.15187546212106073No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7980.1449720320246489No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7490.13607024058453887No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7040.1278951259966827No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6780.1231717264570325No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6780.1231717264570325No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6550.11899333455657271No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6100.11081821996871656No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6060.11009154311646269No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG5900.10718483570744716No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5810.10554981278987592No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5760.1046414667245586No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5710.10373312065924126No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5600.10173475931554306No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)