FastQCFastQC Report
Wed 31 May 2023
EGAF00007943173

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943173
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550117
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25180.45772081211814936No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22250.4044594149971733No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13670.24849259339376895No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13610.24740191631961927No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12840.2334048938680317No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12320.22395235922540113No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT11980.2177718558052196No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11440.2079557621378725No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9470.1721451982032913No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9010.1637833406348104No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8090.14705962549784865No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8080.14687784598549036No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7780.14142446061474195No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG7370.13397150060805246No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6400.11633888790929929No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6120.11124906156326744No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA5980.10870414839025153No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5820.10579567619251906No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5810.10561389668016076No Hit
GCCACCAGTGATCGGGGTACCGCTAGCGTTACCGACCTGCAGGG5660.10288720399478657No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5530.10052407033412893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)