FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943174

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943174
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550117
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49340.8969001139757543No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19910.36192300910533576No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13970.25394597876451735No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13840.25158284510385975No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13530.24594768022075303No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA11850.215408722144562No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11630.2114095728726798No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9950.18087061479648875No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9480.1723269777156496No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9260.16832782844376742No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8590.15614860111576265No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8500.15451258550453814No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8440.15342190843038844No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8390.15251301086859703No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8270.1503316567202977No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG7180.13051768987324514No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6660.12106515523061458No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6150.11179440010034229No Hit
ATCCCAAAAGGCTCCTACTCCGGTTCTACTT5910.10743169180374357No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5740.1043414400936528No Hit

[OK]Adapter Content

Adapter graph