FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences571375
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT68231.1941369503390942No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26980.472194268212645No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG18740.3279807481951433No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16900.295777729162109No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13830.2420476919711223No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11700.20476919711222927No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA10780.1886676875957121No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10340.18096696565302997No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG10270.17974185079851238No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9010.15768978341719536No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7500.13126230584117263No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7490.13108728943338438No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6670.11673594399474951No Hit
ACCAACCGTATCATTACTGTATATATGGGTA5720.10010938525486764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)