FastQCFastQC Report
Wed 31 May 2023
EGAF00007943178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530668
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43470.8191562332757958No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13240.24949686056065187No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9960.1876879706332396No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8760.16507496212321074No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8200.1545222248185306No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8130.15320313265544558No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7490.14114286145009686No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7130.13435895889708818No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC6320.11909517815281873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)