FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541556
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9980.18428380444496967No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7440.1373819143357289No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6840.12630272769575077No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6420.11854729704776606No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6170.1139309692811085No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6150.1135616630597759No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5820.10746811040778792No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5690.105067619969126No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5690.105067619969126No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5520.10192851708779886No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)