FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541556
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12480.23044708211154524No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10950.202195156179601No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10940.20201050306893467No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10420.19240854131428697No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9520.17578976135431978No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8530.15750910339835583No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7530.13904379233172562No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6810.12574876836375187No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6340.11707007216243565No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6330.11688541905176934No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6070.11208443817444548No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5870.10839137596111945No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5820.10746811040778792No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)