FastQCFastQC Report
Sun 21 May 2023
EGAF00007943181

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943181
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518964
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9610.18517662111437402No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8070.1555021157536939No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7430.14316985378561906No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6070.11696379710345998No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5700.1098342081531667No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5650.10887075018691085No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5390.10386076876238044No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5350.10309000238937575No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5310.10231923601637108No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)