FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943182

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943182
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518964
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41360.7969724296868377No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13430.25878480973632084No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10450.20136271494747227No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10230.19712349989594655No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10020.193076976437672No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7440.14336254537887022No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7390.14239908741261437No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6470.12467146083350675No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6170.11889071303597167No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5910.11388073161144126No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5900.11368804001819009No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5800.11176112408567838No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5570.10732921744090147No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)