FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522912
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9220.17632029863533444No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9000.17211308977418763No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG8430.16121259408848906No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6780.129658527629888No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6460.12353895110458356No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5980.1143595863166269No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5750.10996114068906433No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5640.10785753625849091No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5560.10632764212716479No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5540.10594516859433326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)