FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943188

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943188
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543200
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43320.7974963181148749No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8950.16476435935198822No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8640.15905743740795286No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8160.15022091310751104No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6620.12187039764359352No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6280.11561119293078057No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6100.11229749631811486No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG5740.10567010309278352No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5650.10401325478645067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)