FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences636386
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT113171.7783232189268778No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT31560.4959254289063556No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28210.4432844217188939No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG24290.38168658644281933No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22860.3592159475538431No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA20590.3235457725342795No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC18800.29541818958933724No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17480.27467606138412853No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG15270.2399487103738926No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG15150.23806306235523725No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14980.23539172766214217No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC14780.23224898096438326No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC14310.2248635262246498No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13720.21559242346626106No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13400.21056402874984678No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC12000.18856480186553443No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11610.18243644580490456No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG10640.16719412432077385No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10320.16216572960435963No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10050.15792302156238508No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9780.15368031352041056No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9180.14425207342713384No Hit
CAGCAGGACGTCAAAAACCGCCGCAACCCGC8550.13435242132919328No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8360.13136681196632233No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA8090.1271241039243478No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7920.12445276923125273No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7830.12303853321726121No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7750.12178143453815767No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7510.11801013850084698No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7310.11486739180308807No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6950.10921044774712203No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6930.10889617307734613No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6850.10763907439824258No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6800.10685338772380285No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6590.103553503691156No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6510.10229640501205244No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT6430.10103930633294886No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)