FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397764
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64941.6326263814724309No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21080.5299624903208938No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG11730.2948984825172715No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11330.28484226827968345No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4850.12193159763075592No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4580.11514365302038394No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)