FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943195

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943195
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434839
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10760.24744790600659097No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8910.20490342402590384No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT8840.2032936328158238No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7550.17362748051577712No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7140.16419870342816537No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6550.1506304632289192No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6240.14350138786999325No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5990.13775213354827878No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5120.11774472850871241No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4830.11107559349552362No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT4720.10854592159396925No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)