FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943196

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943196
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434839
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15980.36749233624398914No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13950.32080839115166765No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13900.31965854028732477No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9910.22790044131276174No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT9420.21663190284220138No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8680.19961411004992652No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8310.1911052136537891No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7880.1812164962204402No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7170.1648886139467711No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6120.1407417457955703No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5170.11889457937305531No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4420.1016468164079119No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)