FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412233
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA30670.743996720301383No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA27060.6564248859261631No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20870.5062670868174066No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20820.5050541805241211No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20510.49753416150575036No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18570.4504733973262694No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG17460.42354687761532916No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17140.4157842773383014No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15610.37866934476376224No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15170.367995769382849No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT14840.3599905878471641No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12690.3078356172358836No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11260.2731464972479156No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10210.2476754650889182No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9710.23554640215606223No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG9000.2183231327914068No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8910.21613990146349274No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8850.21468441391155002No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8820.21395667013557867No Hit
GATACCGTCGGTCGGAACGAACGGCGTGCCTTTTTCGAAATATT8580.20813471992780783No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG8080.1960056569949519No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7860.19066886930449528No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7860.19066886930449528No Hit
GTTACAGGTTACAGTCAGCGCTTTGTTAACATCAGAACCGGTCA7350.17829722511298224No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7220.17514366875043968No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT7070.1715049498705829No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6850.16616816218012628No Hit
GCCCTCAACATCCAGCATTTCCATGTCGCCCAGGGTAAACTTAG6840.16592558092146917No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6800.1649552558868407No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6690.16228686204161238No Hit
GTAGTCATAGTCACGCGGCAGCAGTACACGTGCGGTAACACGCT6090.14773198652218528No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6010.14579133645292833No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5900.1431229426077No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5780.1402119675038146No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5500.13341969226141528No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5390.13075129841618696No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5090.1234738606564734No Hit
GCCGTTACCAGCGTACAGCAGAGACACTTTTTCCGGTTCGATAC4940.11983514177661661No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4910.11910739800064526No Hit
GTCGCCATACAGCAGGGAAACTTTTTCCGGCTCGATGTTGGAGT4770.11571126037944561No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA4410.10697833506778934No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4350.10552284751584662No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4330.10503768499853239No Hit
AACACCGTTGGTGGTACCAACACCTTTGTCCGGAGATTTGGATG4160.10091380360136137No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4150.10067122234270423No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)