FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405077
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT30660.7568931338979996No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT17210.42485749622911195No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16500.4073299644265165No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13600.3357386373454923No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11800.291302641226236No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11190.2762437758747102No Hit
CGGGATTTCTTCGTAGTCGTTTTCATACCAATCCGGGTTGTGCA8520.21033038163114667No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7420.18317505066937892No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7070.17453471809063462No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6250.1542916531918623No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6220.15355105325654136No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6020.14861372035440176No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5900.145651320613118No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5740.14170145429140632No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT5690.14046712106587145No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5400.13330798835776903No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5350.13207365513223412No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5190.12812378881052244No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5000.12343332255348982No Hit
CAGCAGAGTACCACCTTTAGCGTCCATAATGATATCACCCTGGG4720.1165210564904944No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4650.11479298997474553No Hit
TTTTACGTCTTCCGGAATTGCTTTGCGACGGCGTTTTTTACCTT4620.11405239003942459No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4590.11331179010410367No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4550.11232432352367575No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGCCAC4410.10886819049217802No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4340.10714012397642918No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC4280.1056589241057873No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4270.1054120574606803No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)