FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943203

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943203
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455370
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22660.4976173221775699No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17460.3834244680150207No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17430.38276566308715987No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11490.25232228737070955No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10070.2211388541186288No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8620.1892966159386872No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8600.18885741265344666No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8100.1778773305224323No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG7470.16404242703735425No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6590.144717482486769No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6510.14296066934580673No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6290.1381294332081604No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5710.12539253793618377No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5680.1247337330083229No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5240.1150712607330303No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5230.11485165909041No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4960.10892241473966224No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4780.10496958517249709No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA4730.10387157695939567No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)