FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943204

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943204
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455370
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23040.5059621845971408No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22930.5035465665283176No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17370.38144805323143816No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14970.32874365900256936No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12780.28065089926872655No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12730.2795528910556251No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9790.21499000812526076No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9290.20400992599424644No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9060.19895908821397987No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8860.1945670553615741No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG7370.16184641061115138No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7010.15394075147682104No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6980.15328194654896019No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6270.13769022992291982No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5930.13022377407383007No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5920.13000417243120976No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5850.12846696093286777No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5460.1199024968706766No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5430.11924369194281574No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5320.11682807387399258No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5280.11594966730351143No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4860.10672639831345938No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4850.1065067966708391No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4810.10562839010035796No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4660.10233436546105365No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)