FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943207

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943207
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406080
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC30460.7500985027580773No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA26490.6523345153664303No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC23870.5878152088258471No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22700.5590031520882585No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA19860.4890661938534279No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18820.4634554767533491No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT15530.38243695823483054No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15200.37431048069345946No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA13810.34008077226162337No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11990.29526201733648544No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11470.28245665878644605No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11170.27506895193065406No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC10330.25438337273443656No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10150.2499507486209614No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9980.24576438140267928No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG9140.22507880220646181No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA9110.2243400315208826No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7400.1822301024428684No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6650.1637608353033885No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6640.16351457840819542No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6460.15908195429472025No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6400.15760441292356187No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6200.15267927501970055No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6170.15194050433412135No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6140.15120173364854217No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6070.1494779353821907No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6020.14824665090622538No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT6000.14775413711583923No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5990.14750788022064618No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5960.14676910953506697No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5800.14282899921197792No Hit
CGGCACCTGCGGTTTGCGGGTACCGCTGAAGCGTGGGTGATGCT5720.14085894405043342No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5710.14061268715524036No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5590.13765760441292357No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5560.13691883372734437No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5430.13371749408983452No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5400.13297872340425532No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5290.1302698975571316No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG4940.1216509062253743No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4890.12041962174940898No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC4690.11549448384554767No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG4650.1145094562647754No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG4620.1137706855791962No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC4580.11278565799842394No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4550.11204688731284478No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4430.10909180457052799No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT4400.10835303388494878No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG4300.10589046493301812No Hit
CGGGCTCTCAGAGTGACGCTGGGCGTGCGGGCAGGTCTGTTCAC4150.10219661150512215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)