FastQCFastQC Report
Sun 21 May 2023
EGAF00007943209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374649
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC27590.7364226249102493No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA24760.6608852552655953No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC22550.6018967086526322No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21080.5626599830774939No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA20490.5469119095473364No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16720.4462843888546346No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT15420.41158524378818573No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13930.37181468521202515No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA13540.3614049416920905No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10850.28960440305459245No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10590.28266457404130263No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10530.2810630750382358No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9650.257574422993255No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8950.23889026795747484No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8890.237288768954408No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8080.21566853241300524No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7920.21139786840482694No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6960.185773884355757No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6530.17429647483377775No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT6210.16575514681742112No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6170.1646874808153765No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5880.15694690230055333No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5840.15587923629850872No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5810.1550784867969753No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5790.154544653795953No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5790.154544653795953No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5680.15160857229033042No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5610.1497401567867524No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5490.14653715878061865No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5440.14520257627806293No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5220.13933041326681775No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5210.13906349676630658No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5130.13692816476221745No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5050.13479283275812828No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5010.1337251667560837No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5010.1337251667560837No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5000.13345825025557256No Hit
CGGCACCTGCGGTTTGCGGGTACCGCTGAAGCGTGGGTGATGCT4790.12785300374483852No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4560.12171392423308218No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC4560.12171392423308218No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4430.11824400972643728No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG4420.11797709322592612No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG4230.11290567971621439No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT4130.11023651471110292No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG4130.11023651471110292No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC4110.10970268171008063No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4100.10943576520956949No Hit
TTCCTGGTGATACTCAAAGTAATCAGCTTCACCCACCGGATGGA4060.10836809920752491No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT3950.10543201770190232No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG3780.10089443719321284No Hit
ACGTTTGCGAGTGCGAGATTCCTGCAGCGGAACCTGGGAGGTGT3760.10036060419219056No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)