FastQCFastQC Report
Sun 21 May 2023
EGAF00007943212

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943212
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences402331
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34680.8619768300230408No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20760.5159930504982215No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7970.19809559790321898No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7540.1874078805759437No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7330.18218829769518133No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7130.17721726638016957No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6950.17274333819665896No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6370.15832734738312484No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6170.15335631606811306No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6020.14962804258185425No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5930.14739107849009894No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5800.1441599081353413No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5730.14242004717508716No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5560.13819467055732718No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5440.1352120517683201No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5440.1352120517683201No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5080.12626419540129893No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4890.12154171565203775No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4860.12079606095478598No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4520.11234530771926597No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4520.11234530771926597No Hit
ATCAAAGACCTGCAGGCACAGGTGGTAGAAA4190.10414310604949656No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4030.10016628099748714No Hit

[OK]Adapter Content

Adapter graph