FastQCFastQC Report
Sun 21 May 2023
EGAF00007943213

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943213
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395371
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21100.5336759651061914No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19070.4823317845770175No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT15240.38546074446532497No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15140.3829314744885184No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG12220.3090767911657658No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11560.29238360931884233No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11380.28783092336059046No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT11170.2825194564092966No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11100.28074896742553196No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10690.27037896052062493No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10630.268861398534541No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10370.26228529659484384No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG10070.25469748666442404No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9950.25166236269225617No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9740.2463508957409623No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9080.22965771389403875No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA8590.21726429100768643No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8520.21549380202392182No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8260.2089177000842247No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT7090.17932524135558753No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6750.17072572343444511No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6720.16996694244140315No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5890.1489740016339084No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5870.1484681476385471No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5300.1340513087707495No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5190.13126911179626224No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5190.13126911179626224No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5050.12772813382873302No Hit
CCAGTTACCATCTTCGGTGGTGCGTTCGACGTGGCAACGTGCCA4760.12039325089599388No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4720.11938154290527125No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4440.11229958697021279No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4370.11052909798644818No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4280.10825275500732225No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4000.10117079907226377No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA4000.10117079907226377No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA3970.10041201807922179No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)