FastQCFastQC Report
Wed 31 May 2023
EGAF00007943214

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943214
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395371
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58761.4861990383715546No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA43911.1106024468157756No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26240.6636804419140503No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21780.5508750009484763No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19540.4942193534680085No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14970.37863171552794717No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13730.3472687678155454No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12270.3103414261541691No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG11890.30073020024230407No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11160.2822665294116159No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG10940.27670213546264144No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10590.26784969054381835No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT10150.25672090264586933No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9880.24989187370849153No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9340.23623381583373593No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9220.233198691861568No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8260.2089177000842247No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7930.20057110916076293No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7510.18994817525817523No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7480.18918939426513326No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6930.17527840939269698No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6450.16313791350402534No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6190.1565618115643282No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5970.15099741761535368No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5940.1502386366223117No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5350.1353159437591528No Hit
GACGACCCGGGTGAAGGCCCGTCTACTGGCC4700.11887568890990993No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4640.11735812692382597No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4510.1140700759539774No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4260.10774690101196091No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4230.10698812001891894No Hit
GAACAGGGCCCGGCGGACGATCCGGGTGAGG4090.1034471420513897No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4040.1021825070629864No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA3990.10091787207458312No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)