FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences573839
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23090.4023776703918695No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15980.2784753214751873No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15520.27045913575062No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12310.21452010058570434No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11900.20737523939641606No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11250.19604802043778827No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11080.1930855170178395No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10150.176878880661649No Hit
CGCTCCCTGCAGATCGTCGACCCAAAATACA9780.17043107910058397No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9340.16276342319012824No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9230.1608465092125143No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9190.1601494495842911No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9180.15997518467723526No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG9040.15753547597845388No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8480.14777664118332842No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7910.13784354148114716No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7760.13522956787531No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7400.12895603122130075No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7300.12721338215074263No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7300.12721338215074263No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7180.1251222032660729No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7090.12355381910257059No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6690.1165832228203381No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6640.11571189828505905No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6550.11414351412155674No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6530.11379498430744513No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6190.10786997746754752No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6040.10525600386171033No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5770.10055085137120343No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)