FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943224

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943224
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515853
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48930.9485260335793336No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32720.6342892258065767No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG19860.38499339928235365No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16860.32683729667172623No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16680.3233479305150886No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15450.29950392844473134No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15140.29349446450829986No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14880.2884542689487121No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13150.25491758310991697No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12880.2496835338749605No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11820.2291350442858721No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10980.21285133555489646No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10510.20374021281256482No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9640.18687494305548286No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9560.1853241136525328No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9490.18396713792495148No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9130.1769884056116762No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7230.14015620729161213No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7150.13860537788866206No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6830.13240206027686183No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6680.12949425514633045No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5890.11417981479219855No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5630.10913961923261085No Hit

[OK]Adapter Content

Adapter graph