FastQCFastQC Report
Sun 21 May 2023
EGAF00007943225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554029
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT25250.45575231621449414No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21500.38806632865788615No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19670.3550355667302614No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19030.34348382485393364No Hit
CTGCAGGCGCTCATCGATGCTCAGCTGCAGTTCGTGTGCCGGTA15010.27092444619324985No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12820.23139582946019072No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12550.2265224383561149No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11800.2129852408447933No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11500.20757036184026467No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC10990.198365067532566No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9200.16605628947221174No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9060.16352934593676505No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8860.1599194266004126No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8290.1496311564918082No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8210.14818718875726722No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8200.1480066927904496No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7520.13573296704685134No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG7020.12670816870597026No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6900.12454221710415882No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6280.11335146716146627No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6250.1128099792610134No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6200.11190749942692532No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG5810.10486815672103808No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)