FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943226

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943226
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554029
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26250.47380191289625634No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG25450.4593622355508466No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22220.40106203826875486No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20440.36893375617521823No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19830.3579235021993434No Hit
CTGATTGGCTTCACCAACATCGACGGTCAGG15400.2779637888991371No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14640.2642460954209978No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13760.24836245034104712No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13590.24529401890514757No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12360.2230930149865801No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG11720.21154127311025236No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG11600.2093753215084409No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11070.19980903526710694No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9600.1732761281449166No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9470.17092968057628752No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9320.1682222410740232No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8730.15757297903178355No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8240.14872867665772008No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8010.14457726942091478No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7800.14078685411774472No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6890.12436172113734119No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6700.12093229776780638No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6340.11443444296237201No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6250.1128099792610134No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5730.10342418898649709No Hit
TCTACCCAGCACACTGTTCAGTCCGGCGAAA5690.10270220511922662No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA5570.10053625351741516No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)