FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522801
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29400.5623554660377467No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11200.2142306537286654No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10820.20696211369144285No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10720.20504933999743688No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7910.15130039919586993No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7100.1358069322744218No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6970.1333203264722141No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6650.1271994506513951No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6560.12547795432678974No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5760.1101757647747422No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5690.10883682318893804No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5560.10635021738673031No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)