FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943232

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943232
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501888
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT69991.3945342387146136No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25150.5011078168834481No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20510.40865691150216776No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA16080.3203902065799541No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12650.25204826574853356No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12480.2486610558530987No Hit
TCCTACACCAACGGCAAACTGACTATCACCC11890.23690544503953073No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10580.21080400408059172No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG10400.2072175465442489No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10390.20701829890334097No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10340.20602206069880136No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9800.195262688089773No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA9580.19087923998979853No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9100.1813153532262178No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9090.18111610558530988No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA8890.17713115276715125No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8050.16039435093088497No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7970.15880036980362153No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7700.15342068349910737No Hit
GAACCGATCTACGCTACCATCGACGACCTGG7390.1472440066309615No Hit
ATCAAAGACCTGCAGGCACAGGTGGTAGAAA6400.12751849018107625No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6280.12512751849018108No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA6280.12512751849018108No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6200.12353353736291761No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6190.12333428972200969No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6100.12154106095383829No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6030.12014632746748279No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)