FastQCFastQC Report
Sun 21 May 2023
EGAF00007943234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514300
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47580.9251409683064359No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20000.38887808671981333No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13090.25452070775811786No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12150.2362434376822866No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12080.23488236437876725No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12070.23468792533540733No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11260.2189383628232549No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10640.2068831421349407No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9520.18510596927863116No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9090.17674509041415515No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8160.15866225938168382No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7940.1543846004277659No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7710.14991250243048804No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7520.1462181606066498No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7200.1399961112191328No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6510.12657981722729925No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6240.12132996305658175No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5430.10558040054442933No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5320.10344157106747034No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5170.10052498541707174No Hit

[OK]Adapter Content

Adapter graph