FastQCFastQC Report
Wed 31 May 2023
EGAF00007943238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516888
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46440.8984538236523192No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22610.43742551577904687No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21940.4244633266781198No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17690.3422404853662689No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14610.2826531086037981No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12550.24279921375617153No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12050.2331259383077185No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10550.20410611196235934No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10250.19830214669328752No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8610.1665738032223615No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8530.16502607915060902No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8360.161737165498135No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7800.1509030969958676No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6780.13116961508102337No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6420.12420485675813717No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5680.10988840909442665No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5610.10853415053164323No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5180.10021513364597359No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)