FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943240

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943240
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487704
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA11410.23395338155930648No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10240.20996342043534602No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9010.18474320489477225No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5370.11010777028689533No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5100.10457162541213523No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)