FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483864
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9290.19199609807714565No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9220.190549410578179No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9010.18620934808127904No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8430.1742225088041268No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7570.15644891953110793No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5930.12255509812674635No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5880.12152174991319875No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5270.10891490170791791No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)