FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943242

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943242
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483864
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44450.918646561843824No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9410.19447613378965992No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9050.1870360266521171No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8860.1831093034406362No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8830.18248929451250764No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8100.16740241059471256No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7420.1533488748904651No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6990.14446208025395565No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5740.11862837491526544No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5490.1134616338475274No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5360.11077492849230362No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5360.11077492849230362No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5090.10519484813914654No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)