FastQCFastQC Report
Sun 21 May 2023
EGAF00007943244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534855
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA16670.311673257237943No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13840.2587617204662946No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11170.2088416486711352No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9470.17705733329594No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7760.1450860513597143No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7440.13910312140673642No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6940.12975479335520843No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6630.12395882996326106No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6520.1219021977919249No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5710.10675790634844957No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5600.10470127417711343No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5550.10376644137196063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)