FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475458
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20490.4309528917380715No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17080.3592325715415452No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16650.3501886601971152No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14900.31338204426048144No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14550.30602072107315476No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13560.28519869262900194No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT13080.2751031636863824No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9960.2094822255593554No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9640.20275187293094238No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9450.19875572605782213No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7820.16447299235684332No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7520.15816328676770608No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7310.15374649285531003No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6420.1350276996075363No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6270.1318728468129677No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6250.13145219977369188No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6090.1280870234594854No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6010.12640443530238213No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5940.12493217066491678No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5850.12303925898817561No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5770.12135667083107235No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5430.11420567116338352No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5430.11420567116338352No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5140.1081062890938842No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5130.10789596557424631No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4960.10432046574040188No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4940.10389981870112608No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4940.10389981870112608No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4920.10347917166185025No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)