FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943246

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943246
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475458
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28350.5962671781734664No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17850.37542748255366404No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17330.3644906595324929No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16340.3436686310883401No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15450.32494983784056636No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15100.3175885146532396No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13560.28519869262900194No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13300.27973028111841636No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10190.2143196665110273No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10180.21410934299138937No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10030.21095449019682078No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9260.1947595791847019No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8400.1766717564958419No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8190.17225496258344586No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7770.16342137475865376No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7240.1522742282178447No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7190.15122261061965514No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6470.13607931720572586No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6380.13418640552898467No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6230.13103155273441608No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6200.13040058217550235No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6190.13019025865586445No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6090.1280870234594854No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6070.12766637642020956No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5910.12430120010600304No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5590.11757084747759004No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5580.11736052395795213No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5430.11420567116338352No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5330.11210243596700444No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5280.11105081836881492No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5240.11020952429026329No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5030.10579273037786723No Hit
ACCCTGAACGGCGACGACCGTCACAAAATCG5020.10558240685822932No Hit
GGCTACACTTCCGGCCGTAACCTGTACACCA4990.10495143629931561No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4980.1047411127796777No Hit
GAACGTCCATCCGCCGGTGAAGCGCAGGCTC4980.1047411127796777No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC4950.10411014222076398No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)