FastQCFastQC Report
Wed 8 May 2024
EGAF00007943247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502944
Total Bases22.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG14030.2789574982503022No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13540.26921486288731944No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13480.2680218871285869No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11860.23581154164280713No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11840.23541388305656297No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9170.18232646179296305No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8110.16125055672202074No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7970.15846694661831137No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC7840.15588216580772413No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT7630.15170675065216008No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG6700.13321562639180506No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG6390.12705191830502002No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6110.12148469809760132No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA6090.12108703951135713No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6060.12049055163199084No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5500.10935611121715341No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT5390.10716898899281033No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5220.1037888910097347No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5200.10339123242349049No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)