FastQCFastQC Report
Wed 31 May 2023
EGAF00007943251

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943251
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480355
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23370.4865151814803635No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18840.3922099280740286No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG14200.2956147016269217No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13860.28853660313726304No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13300.27687855856606053No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12310.25626880119911316No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11900.24773344713805417No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10900.2269155104037639No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10390.21629836266927582No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9970.20755482924087396No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9750.20297488315933007No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9670.20130944822058686No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8950.18632053377189786No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8930.18590417503721207No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8880.18486327820049755No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC8610.17924243528223915No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7800.16237990652746406No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6850.1426028666298883No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6700.13948017611974478No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6470.13469205067085802No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6380.1328184363647719No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6220.12948756648728546No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6080.12657305534448482No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5990.12469944103839867No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5890.12261764736496966No Hit
AGAACGGGTCAGATCAATCAGGGACATGTCGCAGTGGCGACAGA5850.12178492989559804No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5770.12011949495685482No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5640.11741316318139708No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT5440.11324957583453904No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5440.11324957583453904No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5340.11116778216111001No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5050.10513058050816584No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4910.10221606936536519No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4860.10117517252865069No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)