FastQCFastQC Report
Wed 31 May 2023
EGAF00007943254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477185
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45720.9581189685342164No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9250.19384515439504593No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6390.1339103282793885No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6160.12909039471064682No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5830.12217483785114788No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5520.11567840564980039No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5210.10918197344845292No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5050.10582897618324129No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)