FastQCFastQC Report
Sun 21 May 2023
EGAF00007943255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497234
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22270.44787765921075384No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20960.4215319145512978No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19350.3891527932522716No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18550.3730637888800846No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15810.3179589489053444No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15720.3161489359134733No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT14690.29543434278428266No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14220.2859820527156228No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14090.28336758950514246No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13250.26647413491434613No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT12390.2491784552142452No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11000.22122381011757042No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10810.217402671579176No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10030.20171589231629375No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10000.20111255465233674No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT8300.16692342036143948No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG8130.16350450693234975No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8010.16109115627652174No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7680.1544544419729946No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7260.14600771467759646No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6760.13595208694497962No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6600.13273428607054222No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6540.13152761074262823No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6460.12991871030540952No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6320.12710313454027683No Hit
GGTCAGGATGGTGCTACGGCGGCCTTTACGCTTGCGTTCCATAG5880.118254182135574No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT5840.11744973191696464No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5800.1166452816983553No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5690.11443304359717961No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5400.10860077951226182No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT5300.10658965396573847No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5290.10638854141108614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)